"Strain detection and genetic diversity in Mediterranean marine microbial populations" Final Degree Project repository. Includes scripts and files created and used to perform the analyses mentioned in the project manuscript. Scripts were executed in MARBITS, the marine bioinformatics platform of the Department of Marine Biology and Oceanography at the Institut de Ciències del Mar (Marine Sciences Institute; ICM-CSIC), Barcelona.
This repository contains:
- The Scripts folder with the Shell and R scripts used for the analyses, as well as files contaning the attributes from BBMO samples.
- The SnpEff summary files contaning information and overall statistics of the genetic variants (SNPs) found in the 4 MAGs.
- The inStrain compare complete output containing tables used to interpret the results.