Beast code in Giters

SeqWare's repositories

seqware

This is the SeqWare Project's main repo.

Language:JavaGPL-3.027 26 15

queryengine

A HBase backed variant database for performing queries on VCF-style data

Language:JavaGPL-3.04 240

public-workflows

A place to collaborate on public SeqWare workflows

Language:Perl2 28 6

seqware-sandbox

A location where we can explore new SeqWare sub-projects, tools, and prototypes before they are ready for the main repo.

Language:JavaGPL-3.02 230

seqware_whitestar

This is the container that houses SeqWare WhiteStar with a minimal set of dependencies

Apache-2.02 25 1

oozie-sge

This is a repository for the SeqWare Oozie-SGE plugin. It lives outside of the main SeqWare repository because it's really an extension of Oozie to support SGE and not specific to SeqWare per se.

Language:Java1 22 1

seqware.github.com

SeqWare home pages

Language:HTML1 230

documentation_builder

This container builds our documentation using nanoc

0260

portal

Provided as-is, this is the unsupported SeqWare Portal as of the 1.1.0-beta

0240

seqware-bag

Ansible playbooks for deploying SeqWare with metadata for Bindle

Language:ShellGPL-3.0021 2

seqware_full

This is the container that houses SeqWare with a full set of dependencies including SGE, Hadoop, and Oozie

Language:ShellApache-2.00270

seqware_test_environment

Sets up a test environment for SeqWare continuous integration testing on Travis-CI

Language:ShellApache-2.0030

unstable.seqware.io

Repository for hosting our 1.1 docs in progress

Language:HTML020