Selmaan

Motion_Correction

Code for motion correcting calcium imaging movies

SPI_Mouse_Control

Code for communicating with ADNS3080 chip on MX18 mouse using Teensy 3.1

NMF-Source-Extraction

NMF pipeline for CA source extraction

DNN_Code

Core Functions for DNNs

glmnet_win64

glmnet with working mex compilation fo MATLAB 2016a on Windows 7, with Visual studio 2015 community and Intel Parallel Studio XE 2017 installed

lightning-pose

Accelerated pose estimation and tracking using semi-supervised convolutional networks.

rlvm

MATLAB implementation of a rectified latent variable model for analysis of neural time series data.

Selmaan.github.io

aniposelib

📷 🐊 An easy-to-use library for calibrating cameras in python

AuxFunctions

Small, helpful, general purpose functions used by Selmaan's personal code

ca_source_extraction

Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

continuous_time_ca_sampler

The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.

DeepLearningTutorial

Deep Learning Tutorial Data and Code

DeepLearningTutorials-master

Deep Learning Tutorial Indo

DeepPoseKit

a toolkit for pose estimation using deep learning

Dissertate

Beautiful LaTeX dissertation templates.

RNN-Theano

Training RNNs with Theano in Python

Signal-Processing

Code for processing fluorescence + other traces

StimControl

Software for Controlling 2p Stimulation

V1inf-Datajoint

Class definition and associated files for DataJoint / MySQL

Vermin

Vermin Software and Mazes