SebastianoF / bruker2nifti

Medical image format converter: from raw Bruker ParaVision to nifti.

SebastianoF/bruker2nifti Issues

Have you ever tried to convert CSI data to Nifti?
Closed 2 years ago9
Installation issue on Macbook with apple M1 chip
Closed 2 years ago4
Passing over the bruker2nifti torch
Updated 3 years ago3
fsl doesn't work anymore on DTI bruker2nifti stacks with more than 1 repetition
Closed 3 years ago5
VisuCoreTransposition not corresponding to RECO_transposition in version 5.1
Updated 4 years ago17
I Can not run bruker2nifti on mac
Closed 4 years ago5
Default qform/sform combination not according to NIFTI spec
Updated 4 years ago1
Refactor testing distinguishing unittest and integration test, based on downloading external dataset from bruker2nifti_qa
Updated 4 years ago
Extend coverage percentage with mock - tests not involving the datasets.
Updated 4 years ago
v1.0.3 "Sample upside down" and "Frame body as frame head" both default to true for command-line
Closed 5 years ago10
Leftover debug statements in v1.0.3
Closed 5 years ago2
Current tests master fails for Python 2.7
Closed 5 years ago2
Converter to nifti officially released in latest Paravision patch - update Readme
Closed 5 years ago1
Update travis to use pytest instead of nosetest
Closed 5 years ago1
Inconsistent Affine Matrix Among Different Way of Converting
Updated 5 years ago17
Build failing due to backward compatibility problems...
Closed 5 years ago
Refactor GUI with PySimpleGUI to allow for web deployment
Closed 5 years ago1
DTI Tensor Reconstruction Support
Closed 5 years ago3
Produce mrtrix (grad) and FSL (bval/bvec) style output files for DWI data
Closed 6 years ago4
GUI installation
Closed 5 years ago3
Handling "Warning, VisuCoreSize in VisuPars parameter file animal2/39/pdata/1 is not a list or a vector in. The study cannot be converted."
Closed 6 years ago1
qform/sform defaults?
Closed 6 years ago1
Python 3 installation working in development mode, not working if installed with pip
Closed 6 years ago1
numpy 1.12.0 rejects floats as reshape arguments
Closed 6 years ago8
Consider adding a "Citing" section to README
Closed 6 years ago
Slope correction disabled for DTI?
Closed 6 years ago5
slope saving as human readable dies if data is stored as floating point
Closed 6 years ago7
Offset should be implemented in case of quantitative scan types
Closed 6 years ago1
Provide a way to use subject ID
Closed 6 years ago9
Fix Coveralls build failure
Closed 6 years ago4
Conversion fails for specra sequences
Closed 6 years ago2
Folders not made in Windows
Closed 6 years ago1
Should the Bruker `reco_map_slope` parameter be multiplied or divided?
Closed 6 years ago9
Enable Coveralls
Closed 7 years ago1
Releasing a new patch-version after JOSS submission
Closed 7 years ago
Update versioning that keeps track of git commit after release
Closed 7 years ago
Add Nifti-1 Nifti-2 option in the GUI output
Closed 7 years ago
Documentation
Closed 7 years ago5
Automatic version string generation fails on Travis
Closed 7 years ago6
Converted MRI is oriented incorrectly: how to fix the orientation of the MRI and bvecs/bvals?
Closed 7 years ago6
-correct-slope does not have any effect
Closed 7 years ago5
Instructions in the README
Closed 7 years ago6
Error reading DWI data: "IndexError: list index out of range"
Closed 7 years ago7
Wiki page
Closed 7 years ago1
GUI
Closed 7 years ago1
Paper
Closed 7 years ago4
How to contribute
Closed 7 years ago1
Dead links in the README
Closed 7 years ago6
Consider removing __all__ from package declaration
Closed 7 years ago3
Git-tag current version
Closed 7 years ago1