ScubaChris's starred repositories
RFdiffusion
Code for running RFdiffusion
stable-diffusion-webui-stable-horde
Stable Horde client for AUTOMATIC1111's Stable Diffusion Web UI
ProteinFlow
Versatile computational pipeline for processing protein structure data for deep learning applications.
colab-db.github.io
Repository of Jupyter Notebooks on Colab, Binder and Huggingface for Bio, Chemistry and Physics
Open-Assistant
OpenAssistant is a chat-based assistant that understands tasks, can interact with third-party systems, and retrieve information dynamically to do so.
stable-diffusion-webui
Stable Diffusion web UI
GrappleMap
Grappling technique map
sample-generator
Tools to train a generative model on arbitrary audio samples
folding_tools
A collection of *fold* tools
Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
DistilProtBert
DistilProtBert implementation, a distilled version of ProtBert model.
biomedical
Tools for curating biomedical training data for large-scale language modeling
ProteinMPNN
Code for the ProteinMPNN paper
iFeatureOmega-CLI
iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequences, 3D structures and ligands. To the best of our knowledge, iFeatureOmega supplies the largest number of feature extraction and analysis approaches for most molecule types compared to other pipelines. Three versions (i.e. iFeatureOmega-Web, iFeatureOmega-GUI and iFeatureOmega-CLI) of iFeatureOmega have been made available to cater to both experienced bioinformaticians and biologists with limited programming expertise. iFeatureOmega also expands its functionality by integrating 15 feature analysis algorithms (including ten cluster algorithms, three dimensionality reduction algorithms and two feature normalization algorithms) and providing nine types of interactive plots for statistical features visualization (including histogram, kernel density plot, heatmap, boxplot, line chart, scatter plot, circular plot, protein three dimensional structure plot and ligand structure plot). iFeatureOmega is an open-source platform for academic purposes. The web server can be accessed through http://ifeature2.erc.monash.edu and the GUI and CLI versions can be download at: https://github.com/Superzchen/iFeatureOmega-GUI and https://github.com/Superzchen/iFeatureOmega-CLI, respectively.
iLearnPlus
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.