SCRC

EcoSISTEM.jl

Julia package for running dynamic ecosystem and epidemiological simulations

rampvis-api

Node and Python FastAPI based RESTful APIs. The APIs are used by (1) RAMPVIS user interface: https://github.com/ScottishCovidResponse/rampvis-ui and (2) RAMPVIS Infrastructure management user interface: https://github.com/saifulkhan/rampvis-ontology-management-ui

rampvis-ui

This is a React based RAMP VIS visualisation interface. This client uses the REST API: https://github.com/ScottishCovidResponse/rampvis-api

SCRCIssueTracking

Central issue tracking repository for all repos in the consortium

simple_network_sim

Adaptation of a simple network simulation model to COVID-19

BEEP

Bayesian Estimation of Epidemic Parameters using Model Based Proposals for MCMC

Covid_Simulation_Model

scrc-vis-modelling

This is a repository for collating the visual analytics applications built by the visualisation team to support the different modelling teams.

Contact-Tracing-Model

Derived from the FMD model and contact data from Sibylle

Covid19_EERAModel

Simple COVID-19 simulation model with ABC-smc inference

DataRepository

Main data repository for parameter estimates stored in the SCRC data registry

hugo_source_files

When pushes are made to this repository, a GitHub actions workflow automatically deploys source files to the website

modelling-software-checklist

A checklist to help developers of modelling software assess and communicate their level of confidence in the software implementation and its readiness to yield trustworthy results.

data_pipeline_api

API to access the data pipeline

ScottishCovidResponse.github.io

Website containing information related to datasets, the data pipeline, and various other technical documents associated with the SCRC project

scrc-vis-analytical

This is a repository for the visual analytics prototypes built by the visualisation team

SEIR-Model

A simple parameterised Java SEIR

SimulationData.jl

Prototype lightweight datadependency package for Simulation.jl.

covid-sim

A fork of Imperial's COVID-19 model to adapt to our data

covid-uk

A fork of LSHTM's COVID-19 model to adapt to our data

cpp-data-pipeline

C++ Wrapper for Python API

data_pipeline_api_cpp

C++ client API for data management pipeline

EnsembleVis

fdp

A CLI tool for the FAIR Data Pipeline

hugo-book

Hugo documentation theme as simple as plain book

inference-for-contact-tracing-model

Parameter generation and sensitivty analysis for Scottish Covid

SCRCdata

Processing scripts and templates for the SCRC data pipeline

SCRCshinyApp

Shiny app for visualising data (SCRC)

SimpleContactTracing.jl

Simple partner to the java contact tracing repository

temporary_data

Temporary example data repository