SciLifeLab / NGI-ChIPseq

Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm

Repository from Github https://github.comSciLifeLab/NGI-ChIPseq

SciLifeLab/NGI-ChIPseq Issues

Strand cross-correlation analysis before, or after de-duplication?
Closed 7 years ago2
Put phantompeaktools results in MultiQC report
Closed 7 years ago2
deepTools - bamPEFragmentSize, plotPCA
Closed 7 years ago4
Validate macsconfig inputs before starting
Closed 7 years ago
workflow config not available when parsing config
Closed 7 years ago2
Peak annotation requires internet access
Closed 7 years ago3
To high memory requirement for local jobs
Closed 7 years ago1
Remove multimapping reads
Closed 7 years ago3
Add samtools stats for mapping stats
Closed 7 years ago2
Collect software versions, help message
Closed 7 years ago1
Add blacklist region filtering
Closed 7 years ago3
Docker version failed to carry out BWA process and exit. Any suggestions?
Closed 8 years ago42
Make scripts stand-alone
Closed 8 years ago1
Write documentation describing output
Closed 8 years ago1