Sacha Beaumeunier's repositories
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
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data-science-ipython-notebooks
Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
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hts-nim
nim wrapper for htslib for parsing genomics data files
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intervaltree
A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.
kann
A lightweight C library for artificial neural networks
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knitr
A general-purpose tool for dynamic report generation in R
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Platypus
Platypus Variant Caller
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PyVCF
A Variant Call Format reader for Python.
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