SantosJGND

INSaFLU

INSaFLU (“INSide the FLU”) is an influenza-oriented bioinformatics free web-based suite

docker

local_branch-insaflu-docker

TELEVIR

A pipeline that uses a combination of tools to identify viral sequences in metagenomic data.

filemanager

efsa_parser

parse output of efsa pipeline to compound excel sheet.

fastq-split

a simple script to subset fastq files in a predictable and pair-end friendly way

SI_NOTEBOOKS

Statistical Inference Class Notebooks

metagen_merge

app for merging metagen reports

televir_benchmark_eda

exploratory analysis of metagenomics workflow benchmark

santosjgnd.github.io

docker-1

Easy installation for INSaFLU made by docker

entrez_direct

entrez_direct_app

insaflu_upload

Insaflu - Minion - output collection and automatic upload to Insaflu / analysis

Tools

Tools of day to day use

Research_Log

Personal Research / Coding Journal.

algn2pheno

A bioinformatics tool for rapid screening of genetic features (nt or aa changes) potentially linked to specific phenotypes

Galaxy_KDE_classifier

Pipeline for the classification and exploration of local genomic variation.

Ideogram_vis

Heroku

App_deployment

Remap

metagen

django_metagenomics_website_toy

KAUST

work at KAUST

Membranes

Extracting membrane positions from microscope photography

MScount

pipeline for the study of mutation spectrum sampling variance under specific demographic scenarios.

Models

Coordinating local genomic analyses.

Imputation

VCF, dimensionality reduction, distances, KDE

Tools_and_toys

Products for genomic and genetic analysis.

Nlas

Kinship structure of a temperate bat maternity colony

Coalescent

coalescent theory, work and play

Tools_II

everyday things that might be useful.