Sanger-ad7's repositories
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Language:NextflowMIT000
hello
Classic hello world script in Nextflow language
Language:NextflowApache-2.0000
VEP-nf
Variant Effect Predictor (VEP) on Nextflow
000
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:NextflowMIT000
Language:PythonGPL-3.0000
metadata-check
Tests to perform on the iRODS metadata for a BAM file, versus the information in the file header
Language:Python000
five-dollar-genome-analysis-pipeline
Workflows used for germline short variant discovery in WGS data
BSD-3-Clause000
vr-codebase
The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
Language:Perl000