Sampurna Mukherjee's repositories
MPhil_HLA_Ab
Code used for analysis of HLA-Ab crystal structures for MPhil by thesis of Sampurna Mukherjee
r_for_data_science_exercises
Exercises from the book R for data science : https://r4ds.hadley.nz/
R_for_infectious_disease
Exercises on using RStudio for infectious disease modelling
hello_world
Just beginner stuff.
genomics_learning_SM
A compilation of code and data I used from freely available materials to brush up my genomics/transcriptomics analysis skills
NGS-introduction-training
SIB course that introduces analysis of NGS data
mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics simulations.
scrnaseq_python_2023
Materials for the EBI course "Single-cell RNA-seq analysis using Python 2023"
biobb
Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools.
HADDOCK-antibody-antigen
Material to run the HADDOCK antibody-antigen modelling protocol
git_learn_13_7_22
Brushing up github basics from SW Carpentry
python-data-science
Python3 teaching materials for data science (2 days)
BondPack
A collection of PyMOL plugins to visualize atomic bonds.
EMBL_BTM_2019
Code for the BTM course 2019
python-basic
Python3 teaching materials for basic introduction to Python (2 days)
sq2
Repository for code used in the PLOS Genetics paper on HLA variation
progbio
Teaching materials for classes teaching programming to biologists