SamSievertsen

nda-tools

Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.

basher

A package manager for shell scripts.

slurm-submit-to-multiple

Submit a job to multiple SLURM partitions

ReViewCNV

github-readme-stats

:zap: Dynamically generated stats for your github readmes

LSTM_RAW

LSTM using only numpy! For dependency management when tensorflow and pytorch discontinue maintenance of their older versions

abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

nda-abcd-s3-downloader

Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.

csv_extract_airflow_docker

Writes the CSV file to Postgres, read table and modify it. Write more tables to Postgres with Airflow.

freesurfer

Neuroimaging analysis and visualization suite

Lifespan

Code used in the lifespan brainchart project

jekyll-now

Build a Jekyll blog in minutes, without touching the command line.

hyakvnc

hyakvnc -- A tool for launching VNC sessions on Hyak.

github-markdown-toc

Easy TOC creation for GitHub README.md

ABCD_data_management

A manual for accessing and working with ABCD data

ABCD

Microarray-Tutorials

Practice Multi-Platform Microarray Tutorial

neuroCombat_Rpackage

neuroCombat R package

CBIG

geneExpression_Repository

Maps gene samples into surface parcellation

AI-Catalog

Huge AI models catalog. A curated list of AI tools, platforms, and resources across various domains.

fMRI-cleanup

ggsegGordon

ENIGMA-FreeSurfer-protocol

These protocols are for the analysis of subcortical volume, and cortical thickness and surface area data within FreeSurfer ROI's for ENIGMA working groups.

neuroHarmonize

Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables with support for NIFTI images. Complements the work in Neuroimage by Pomponio et al. (2019).