Sam Bryce-Smith's repositories
APAeval
Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples
bedops_parse_star_junctions
Pipeline for taking STAR's SJ.out files and parsing the counts for a given bed of named spliced junctions
iCount
iCount, protein-RNA interaction analytics
LABRAT
Lightweight Alignment Based Resolution of Alternative Three Prime Ends
lapa
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
peka
Find motifs enriched around prominent crosslinks
polyAsite_workflow
Pipeline for the processing of 3' end sequencing libraries
pyranges
Performant Pythonic GenomicRanges
rna_seq_snakemake
Snakemake Pipeline For RNA-Seq in UCL Cluster
SamBryce-Smith
Personal repo for profile README
satuRn
satuRn is a highly performant and scalable method for performing differential transcript usage analyses.