SamBryce-Smith

qapa

RNA-seq Quantification of Alternative Polyadenylation

advent_of_code_2020

APAeval

Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples

bedops_parse_star_junctions

Pipeline for taking STAR's SJ.out files and parsing the counts for a given bed of named spliced junctions

bookclub-Advanced_R

iCount

iCount, protein-RNA interaction analytics

LABRAT

Lightweight Alignment Based Resolution of Alternative Three Prime Ends

lapa

Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

my3UTRs

peka

Find motifs enriched around prominent crosslinks

personal_conda_envs

polyA_junctions

polyAsite_workflow

Pipeline for the processing of 3' end sequencing libraries

pyranges

Performant Pythonic GenomicRanges

rna_seq_snakemake

Snakemake Pipeline For RNA-Seq in UCL Cluster

SamBryce-Smith

Personal repo for profile README

satuRn

satuRn is a highly performant and scalable method for performing differential transcript usage analyses.