Jianjiao Chen's repositories
Algorithms-1
Algorithm problems practice
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
awesome-machine-learning-python
Machine and Deep Learning in Python
basicGoogleAnalytics2ndEdition
The basic Google Analytics application from chapter 2 of the second edition of my book, Web Application Development with R using Shiny
brainmapr
R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data with in situ RNA patterns from the Allen Developing Mouse Brain Atlas
Census_BEAM
Cenus / BEAM paper's github repo for reproducing all figures / tables
Data-Analysis-and-Machine-Learning-Projects
Repository of teaching materials, code, and data for my data analysis and machine learning projects.
DataScienceResources
Open Source Data Science Resources.
DataScienceSpCourseNotes
Compiled Notes for all 9 courses in the Coursera Data Science Specialization
DeLorean
R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experiments.
DEMO
Differential Evolution for Multiobjective Optimization and its variants
easychart
A visual editor for the world's best web charting tool: Highcharts.
frontend-guidelines
Some HTML, CSS and JS best practices.
GoogleAnalytics2ndEdition
Google Analytics application for 2nd edition of Shiny book
gs-securing-web
Securing a Web Application :: Learn how to protect your web application with Spring Security.
hackpack-web-frontend
Learn how to make a React+Redux app
latex_template
useful latex template for writing and submiting.
learning-spark-examples
Examples for learning spark
machine-learning-for-software-engineers
A complete daily plan for studying to become a machine learning engineer.
machine-learning-resources
This is a list of free resources to learn Machine Learning.
Python
Python script and Documents
research-method
论文写作与资料分享
research-tool
some useful tools for research work
scater
Single cell analysis tools for expression from RNA-seq in R
scLVM
scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.
SIMLR
Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch)
wishbone
Wishbone is an algorithm to align cells along developmental trajectories with branches