Spy Han's repositories
Ankh
Ankh: Optimized Protein Language Model
d2l-zh
《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被60多个国家的400多所大学用于教学。
DeepLearning-MuLi-Notes
Notes about courses Dive into Deep Learning by Mu Li
efficient-evolution
Efficient evolution from protein language models
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
evodiff
Generation of protein sequences and evolutionary alignments via discrete diffusion models
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
GearNet
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
InstructPLM
The first large protein language model trained follows structure instructions.
linux-tutorial
:penguin: Linux教程，主要内容：Linux 命令、Linux 系统运维、软件运维、精选常用Shell脚本
ML-Papers-Explained
Explanation to key concepts in ML
NGS-analysis
All files relevant to perform paired-end NGS data analysis. The reported codes are associated with Zuercher, Kleefeldt, Funke, Birnbaum, Fredens et al. (2023).
nlp-tutorial
Natural Language Processing Tutorial for Deep Learning Researchers
OpenComplex
Trainable PyTorch framework for developing protein, RNA and complex models.
papers-for-molecular-design-using-DL
List of molecular design using Generative AI and Deep Learning
papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
ProstT5
Bilingual Language Model for Protein Sequence and Structure
ProteinLM-TDG2-Mutation
Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing
ProteinMPNN
Code for the ProteinMPNN paper
ProteinNPT
Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
rf_diffusion_all_atom
Public RFDiffusionAA repo
RFdiffusion
Code for running RFdiffusion
SaProt
Official implementation of SaProt.
weread2notion
将微信读书划线同步到Notion