SPYfighting

alphafold

Open source code for AlphaFold.

Ankh

Ankh: Optimized Protein Language Model

ArDCA.jl

Autoregressive networks for protein

ctrl

Conditional Transformer Language Model for Controllable Generation

d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被60多个国家的400多所大学用于教学。

DeepLearning-MuLi-Notes

Notes about courses Dive into Deep Learning by Mu Li

DeepSequence

A generative latent variable model for biological sequence families.

ECNet

An evolutionary context-integrated deep learning framework for protein engineering

efficient-evolution

Efficient evolution from protein language models

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

GearNet

GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

Learning-Computation-with-Chenggong

linux-tutorial

:penguin: Linux教程，主要内容：Linux 命令、Linux 系统运维、软件运维、精选常用Shell脚本

ML-Papers-Explained

Explanation to key concepts in ML

nlp-tutorial

Natural Language Processing Tutorial for Deep Learning Researchers

OpenComplex

Trainable PyTorch framework for developing protein, RNA and complex models.

papers-for-molecular-design-using-DL

List of molecular design using Generative AI and Deep Learning

papers_for_protein_design_using_DL

List of papers about Proteins Design using Deep Learning

progen

Official release of the ProGen models

ProstT5

Bilingual Language Model for Protein Sequence and Structure

protein_bert

ProteinMPNN

Code for the ProteinMPNN paper

pyrosetta-basic

pytorch-tutorial

PyTorch深度学习快速入门教程（绝对通俗易懂！）

RFdiffusion

Code for running RFdiffusion

RoseTTAFold2NA

RoseTTAFold2 protein/nucleic acid complex prediction

torch_base

Quickly bring up your PyTorch project(a skeleton)

Transformers-Tutorials

This repository contains demos I made with the Transformers library by HuggingFace.

weread2notion

将微信读书划线同步到Notion