Simon Pearce's repositories
CompoundMatrixMethod
Solving boundary-value eigenvalue problems in Mathematica using the Compound Matrix Method to calculate the Evans function
NGSCheckMate
Software program for checking sample matching for NGS data
bioconda-recipes
Conda recipes for the bioconda channel.
BuildABiocWorkshop
Template for building a bioconductor workshop package using github actions
configs
Config files used to define parameters specific to compute environments at different Institutions
manchester_papers
Test repo for pull requests
methylaction
Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq)
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nf-co.re
Code and files for the main nf-core website.
PacletServer
A paclet server for Mathematica
plyranges
A grammar of genomic data transformation
qsea
QSEA bioconductor package
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
test-datasets
Test data to be used for automated testing with the nf-core pipelines
website
Nextflow public web site