SPMIC's repositories
conilab
Computational Neuroimaging Lab Website
BRC_Pipeline
The BRC Pipeline scripts are being released for processing magnetic resonance imaging (MRI) data. This processing pipeline could be applied to different modalities such as T1w/T2w MRI, diffusion MRI, and functional MRI datasets.
fsort
File sorter for pipeline preprocessing
fproc
Base for simple processing pipelines
NFacT
Non-negative matrix Factorisation of Tractography data
migtools
Scripts to help handle MIG partitions of NVIDIA GPUs
XTRACT_Macaque_MultiTemplate
XTRACT protocols for the Macaque in 5 template spaces (F99, D99, NMTv2.0, INIA, Yerkes19).
xnat-nott
Simple XNAT helpers based around Nottingham applications
rodent_anat
Anatomical pipeline for rodent MRI based on fsl_anat interface
demistifi_scripts
Processing scripts for DEMISTIFI
xnat-dicomqc
XNAT container script to do simple configurable tag-based QC on scan DICOMs
ON-Harmony_UKBB_pipeline
Cross-scanner version of UK-Biobank Pipeline (v1)
brightmind_pipeline
Procesing pipeline of BRIGhTMIND trial
3T_MRI_harmonisation
Code and data associated with the manuscript "A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches".
trkvis
Simple tractography visualisation tool
deltab
Implementation of brain age prediction from Smith et al 2019
cmore_pipeline
Analysis pipeline for CMORE data
xnat-autorun
Script to automatically run a command on all sessions in a project
xnat-imgqc
XNAT container plugin to generate generic image-based QC metrics
usefultools
Useful tools for public sharing
PSO_code
Particle Swarm Optimisation code to fit CEST spectra
BWAS_IPF
Brain-Wide Association Study (BWAS) to find the association between brain imaging-derived phenotypes and idiopathic pulmonary fibrosis genetic risk
brkraw
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data