Junwei Song's repositories
kingfisher-download
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
scAS
single-cell alternative splicing analysis
dynbenchmark
Comparison of methods for trajectory inference on single-cell data 🥇
SinONTbar
A R package designed for singleron and ONT data barcode assignment
dyno
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
seurat
R toolkit for single cell genomics
stitcher.py
stitcher.py reconstructs molecules from Smart-seq3 data.
pysashimi
Pure python scripts to make sashimi plots
ISS_pyIRIS
Information Refining for In situ Sequencing (Python3 version)
probe
ProbeDesign
primer3-py
Simple oligo analysis and primer design
practicalAI
A practical approach to learning machine learning.
jekyll-material-theme
A Jekyll Theme based on Material Design using Materialize.