SHEERANER

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

carrot

Free ChatGPT Site List 这儿为你准备了众多免费好用的ChatGPT镜像站点

Awesome-Diffusion-Models

A collection of resources and papers on Diffusion Models

PyTorch-BigGraph

Generate embeddings from large-scale graph-structured data.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

torch-cam

Class activation maps for your PyTorch models (CAM, Grad-CAM, Grad-CAM++, Smooth Grad-CAM++, Score-CAM, SS-CAM, IS-CAM, XGrad-CAM, Layer-CAM)

ddim

Denoising Diffusion Implicit Models

scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

MedSegDiff

Medical Image Segmentation with Diffusion Model

graphein

Protein Graph Library

PyGCL

PyGCL: A PyTorch Library for Graph Contrastive Learning

awesome-deep-learning-single-cell-papers

DeepHypergraph

A pytorch library for graph and hypergraph computation.

grape

🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations

protein_bert

basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

DNA-Diffusion

🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨

SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

DNABERT_2

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

gpn

Genomic Pre-trained Network

cellot

Learning Single-Cell Perturbation Responses using Neural Optimal Transport

proteinshake

Protein structure datasets for machine learning.

SFADA-GTV-Seg

(TMI-2024) Source-Free Active Domain Adaptation (SFADA) for GTV Segmentation across Multiple Hospitals

RAN

RAN: Recurrent Attention Networks for Long-text Modeling | Findings of ACL23

RSVIS

(TMI-2024) Video-Instrument Synergistic Network for Referring Video Instrument Segmentation in Robotic Surgery

scPRINT-temp

Single Cell Pretrained Regulatory network INference from Transcripts

SFADA-UWF-SLO

(MICCAI 2024 Early Acc)Advancing UWF-SLO Vessel Segmentation with Source-Free Active Domain Adaptation and a Novel Multi-Center Dataset

STmultiVerse

A python library for integrating spatial multi omics data and inferring spatial regulators.

Rene

A real-time monitoring system for respiratory diseases developed based on Rene model