SEED Toolkit's repositories
dl4j.decision
Small DL4J library for RandomForest only
dl4j.jfx
Improved, JavaFX version of DL4J
genome.bins
Binning-related utilites
genome.survey
General utilities for processing genomes
ncbi.utils
Java Utilities for accessing NCBI
threonine
Utilities related to the Synthetic Biology project
bins.generate
New Metagenome Binning Algorithm
cli.utils
Applications that use PATRIC command-line utilities
core.utils
Weekly CoreSEED Utilities
dl4j.clusters
Java command for unsupervised clustering
dl4j.run
Basic Deep Learning Application
genome.align
Alignment utilities
genome.blast
BLAST utilities for SEEDtk
genome.distance
Compute kmer distance between genomes
genome.download
Commands for converting genomes to GTOs
io.template
Text generation utilities
kmers.anno
Kmer-based annotation engine
kmers.hammer
Utilities for processing thor-hammers
kmers.reps
Java module for representative genomes
p3_code
SEEDtk Fragment Shared with PATRIC
p3api
Java library for PATRIC DATA API
p3api.common
Useful PATRIC utilities
rna.erdb
Maintenance and analysis utilities for the RNA Seq database
rna.utils
Utilities for parsing and processing RNA expression data
sequence
Sequence-hashing utilities
web.rna
Web interface for RNA threonine project