Giters
Department of Biomedical Informatics (SBU-BMI)

Department of Biomedical Informatics

SBU-BMI

Geek Repo

Location:Stony Brook University, Stony Brook, NY

Home Page:http://bmi.stonybrookmedicine.edu

Github PK Tool:Github PK Tool

Department of Biomedical Informatics's repositories

wsinfer

🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

Language:PythonLicense:Apache-2.0Stargazers:53Issues:5Issues:117

quip_cnn_segmentation

CNN based segmentation codes

Language:PythonLicense:BSD-3-ClauseStargazers:47Issues:27Issues:10

champkit

Benchmarking toolkit for patch-based histopathology image classification.

Language:PythonLicense:Apache-2.0Stargazers:37Issues:3Issues:5

u24_lymphocyte

Language:PythonLicense:BSD-3-ClauseStargazers:30Issues:26Issues:6

quip_distro

Language:JavaScriptLicense:BSD-3-ClauseStargazers:28Issues:20Issues:290

quip_cancer_segmentation

Language:PythonLicense:BSD-3-ClauseStargazers:14Issues:13Issues:4

quip_paad_cancer_detection

Language:PythonLicense:BSD-3-ClauseStargazers:7Issues:18Issues:2

MappingOHDSI2HDF5

Build JSON mappings for mapping OHDSI tables to HDF5

Language:Jupyter NotebookStargazers:6Issues:10Issues:0

nscale

Libraries of high performance analysis methods

Language:C++Stargazers:6Issues:10Issues:2

quip_classification

Language:PythonLicense:BSD-3-ClauseStargazers:4Issues:20Issues:3

region-templates

Region Templates development

Language:C++Stargazers:4Issues:13Issues:0

deep_survival_analysis

Survival analysis with deep learning

Language:PythonLicense:BSD-3-ClauseStargazers:3Issues:12Issues:1

quip_prad_cancer_detection

Language:PythonLicense:BSD-3-ClauseStargazers:3Issues:17Issues:0

PathDB

Language:PHPLicense:BSD-3-ClauseStargazers:2Issues:9Issues:5

QuIPImageFetch

Language:PythonStargazers:2Issues:1Issues:0

til_classification

Language:PythonLicense:BSD-3-ClauseStargazers:2Issues:0Issues:0

quip_lung_cancer_detection

Language:PythonLicense:GPL-3.0Stargazers:1Issues:2Issues:0

tumor-til-survival-analysis

Scripts to run analysis of tumor/TILs.

Language:ShellLicense:Apache-2.0Stargazers:1Issues:2Issues:14

wsinfer-zoo

Model zoo for WSInfer

Language:PythonLicense:Apache-2.0Stargazers:1Issues:9Issues:4

ImageLoader

Language:DockerfileStargazers:0Issues:3Issues:2

til_align

TIL Alignment

Language:RLicense:Apache-2.0Stargazers:0Issues:9Issues:17

featuremap_util

Transform raw data to featuremaps

Language:PythonLicense:BSD-3-ClauseStargazers:0Issues:2Issues:0

generate_heatmap_pannels

Stargazers:0Issues:2Issues:0

hatch

Language:JavaLicense:GPL-2.0Stargazers:0Issues:2Issues:0

manifest_util

manifest file generator

Language:PythonLicense:BSD-3-ClauseStargazers:0Issues:12Issues:0

quip_converter

Convert vendor format to tiled, multires tiff format

Language:ShellLicense:BSD-3-ClauseStargazers:0Issues:9Issues:0

quip_reports

Report generator

Language:PythonLicense:BSD-3-ClauseStargazers:0Issues:11Issues:0

SegmentationLoader

Load WSI segmentations to mongodb instance

Language:PythonLicense:BSD-3-ClauseStargazers:0Issues:2Issues:1

uploadHeatmaps

Language:ShellStargazers:0Issues:10Issues:4

wsinfer-mil

CLI tool to run specimen-level inference on whole slide images

Language:PythonLicense:Apache-2.0Stargazers:0Issues:2Issues:1