Department of Biomedical Informatics's repositories
quip_cnn_segmentation
CNN based segmentation codes
MappingOHDSI2HDF5
Build JSON mappings for mapping OHDSI tables to HDF5
region-templates
Region Templates development
deep_survival_analysis
Survival analysis with deep learning
tumor-til-survival-analysis
Scripts to run analysis of tumor/TILs.
wsinfer-zoo
Model zoo for WSInfer
featuremap_util
Transform raw data to featuremaps
manifest_util
manifest file generator
quip_converter
Convert vendor format to tiled, multires tiff format
quip_reports
Report generator
SegmentationLoader
Load WSI segmentations to mongodb instance
wsinfer-mil
CLI tool to run specimen-level inference on whole slide images