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Ruben Dries (RubD)

RubD

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Company:Boston Medical Center

Location:Boston

Home Page:www.drieslab.com

Twitter:@RnDries

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Ruben Dries's starred repositories

istar

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TileDB-R

R interface to TileDB: The Modern Database

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BPCells

Scaling Single Cell Analysis to Millions of Cells

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NCH_Coder_Upgrade

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mosaic

An extensible framework for linking databases and interactive views.

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GPUmatrix

GPUmatrix: An R package for algebra using GPU

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h3-duckdb

Bindings for H3 to DuckDB

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ctv-hpc

CRAN Task View: High-Performance Computing with R

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imageseg

R package for deep learning image segmentation

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dm

Working with relational data models in R

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geo

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vitessceR

R API and htmlwidget for Vitessce

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Rarr

A simple native R reader for Zarr Arrays

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CISI

code for composite in situ imaging (cisi) analysis

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STtools

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TESLA

Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA

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motif

Pattern-based spatial analysis in R

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zstd

Zstandard - Fast real-time compression algorithm

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TissUUmapsCore

TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaps can be used as a web service or locally in your computer, and allows users to share regions of interest and local statistics.

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SOMA

A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.

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gpuR

R interface to use GPU's

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CytoExploreR

Interactive Cytometry Data Analysis

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Cho_Xi_Seqscope

Seqscope codes

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scattermore

very fast scatterplots for R

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bioicons

A library of free open source icons for science illustrations in biology and chemistry

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Rvision

Basic computer vision library for R

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SimpleITK-Notebooks

Jupyter notebooks for learning how to use SimpleITK

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terra

R package for spatial data handling https://rspatial.github.io/terra/reference/terra-package.html

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ilastik

ilastik-shell, applets, and workflows to string them together.

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ivis

Dimensionality reduction in very large datasets using Siamese Networks

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