Rothamsted's repositories
knetbuilder
KnetBuilder data integration platform for building knowledge graphs. Previously known as ondex.
genomaps.js
Interactive visualization of highdensity SNP, QTL, GWAS and gene data.
knetmaps.js
KnetMaps: a BioJS component to visualize biological knowledge networks
graphdb-benchmarks
Application to benchmark Neo4j+Cypher/Virtuoso+SPARQL/ArcadeDB+Gremlin querying
agri-schemas
Development of schemas and ontologies for the agrifood, inspired to schema.org and bioschemas.
bioknet-onto
The Bio Knowledge Network, powering knowledge graphs released by the Knetminer project
knetgraphs-gene-traits
Enrichment Analysis Use Cases. Tools to analyse plant biology knowledge graphs and find significant traits and bioprocess from gene expression sets. The project uses data from Knetminer, ENSEMBL, EBI Gene Expression Atlas and others, exported as Knowledge graphs using Agrischemas/Bioschemas annotations.
covid19-kg
Documentation for the COVID-19 KnetGraph SPARQL and Cypher endpoints
knetminer-common
Parent POM for Knetminer projects, also containing common files.
knetminer-lightgraph
Low RAM Knowledge Graphs for Knetminer
graphql-api
KnetMiner Platform API BETA
knetminer-lodestar
Knetminer-customised version of LODEStar
ondex-base
Basic ONDEX components.
ondex-desktop
ONDEX Desktop Applications.
knetminer-website
KnetMiner website
easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
fculmorum-kg
Fusarium culmorum KG ETLs for public access
kgraph-usecases
A test project to develop Knetminer use cases about using raw data endpoints.
knetminer-backend
The new Knetminer backend, based on graph databases.
knetminer-backend-doc
Documentation, demos, presentations, etc for the Knetminer Data Backend.
knetminer-testing
Material about testing knetminer
neo4j-server-maven-plugin
Start and stop any version of Neo4j community server
ondex-full
Aggregator used to download and build all about ONDEX
ondex-old-components
ONDEX outdated components, which are not used anynmore.
ondex-opt
ONDEX Optional Components.
ProfileGenerator
Experimental scripts for creating a new Bioschemas Profile