RosettaCommons / tools

Tools for parsing Rosetta source code and scripts for running specific Rosetta applications.

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parse_tag can't handle negative seqpos

everyday847 opened this issue · comments

Occasionally the PDB has 'negative' sequence positions (for example: -1. write the author for additional examples of negative numbers) for diverse reasons. If one of these PDBs is handed to the "fasta creation" utilities in rna_tools, it pukes -- it thinks that it's looking at a malformed tag (because it expects A:1-10, which has one hyphen, not A:-1-10).

Simple fix that I don't want to do right now.