Romain Feron's repositories
snakemake-slurm
Snakemake profile for Slurm schedulers
workshop-snakemake-sibdays2020
Repository for the virtual workshop "Snakemake for reproducible analyses" @ SIB-days 2020
workshop-snakemake-sibdays2022
Repository for the workshop "Introduction to Snakemake" @ SIB-Days 2022
mwga-utils
Collection of utilities for processing Multispecies Whole Genome Alignments
workshop-snakemake-pypharma2019
Implementation of exercises for the workshop "Snakemake for reproducible analyses"
paper-sexdetermination-bowfin
Workflow and scripts used for sex determination analyses in Bowfin
workshop-snakemake-unil2021
Repository for the workshop "Introduction to Snakemake" @ UNIL 2021
Polygenic-model
Simulations of polygenic sex-determination system
RADSex-vis
R package to visualize RADSex results
anguis
Python package implementing a collection of snakemake-related utilities
bioconda-recipes
Conda recipes for the bioconda channel.
clusterpolice
Server/client system to monitor HPC usage
nanopore-snake
Nanopore assembly and polishing pipeline with snakemake
Nanopore_comparison
Comparison of several assembly and polishing methods for assembly of Nanopore and Illumina reads
paper-sexdetermination-radsex
RADSex paper analyses workflow
pileup_test
Testing a simple implementation of pileup with htslib to be integrated in PSASS
PSASS-process
Pipeline to analyse PoolSex data
raid_alert
Discord bot to track boss spawn on a private game server
UMLS_Tagging
UMLS Tagging project for Analysis of Textual Data course