RodrigoZepeda / mitigation-measures-and-inhospital-dynamics

Code required to reproduce book chapter

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Mitigation measures and inhospital dynamics

Code to reproduce results from chapter (TBA).

Running code

To get the results from the paper run run_simulations.R which will download the data from the online repository, format it, fit the Stan model and evaluate the different scenarios.

Auxiliary functions

In order for Stan to work in my laptop I needed to find the starting points for the parameters. The julia function fitmodelserver.jl performs optimization of the parameters and generates valiable initial points. I copied them to R but that's where they come from.

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Code required to reproduce book chapter

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Language:Stan 53.0%Language:R 34.7%Language:Julia 12.3%