RodrigoZepeda / Meningococcal_vaccination

Meningococcal disease vaccination model

Meningococcal disease vaccination model

Data

Data is downloaded from the CDC's Wonder website. They follow the case definitions specified by the National Notifiable Disease Surveillance System. Weekly data is available from 1996 to 2023.

Download process

Data is downloaded from the weekly reports using the download_wonder.R script. The script process_wonder.R generates the different data files.

graph TD;

    download_cdc_wonder.R -->|Downloads data from Socrata API| download_wonder.R;
    download_wonder.R -->|Downloads data| process_wonder.R;
    process_wonder.R -->|Generates weekly totals| meningococcal_total.rds;
    process_wonder.R -->|Weekly totals since 2018| meningococcal_variants.rds;
    process_wonder.R -->|Yearly totals by age\n2016 to 2020| meningococcal_age.rds;

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Model

TBA