RodrigoGM

mousegenomics

Scripts for setting up genetics and genomics workstations without root privilages, running analysis pipelines, etc...

algebra

quick python algebra package

apg

Automated Password Generator (APG) fork

bbmm

BISCUIT_SingleCell_IMM_ICML_2016

R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

CNT-MD

Software for inferring the copy-number profiles of tumor clones and their evolution from fractional copy numbers obtained from multi-sample bulk sequencing data.

ConsensusClusterPlus

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ConsensusClusterPlus.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ConsensusClusterPlus.

fqgrep

An approximate sequence pattern matcher for FASTQ/FASTA files.

GISTIC2_example

a example script and reference files to run GISTIC2

humanomics

Pipelines for analyses of -omics experiments in human

LinkedQTL

Simulation of two linked QTL in a single chromosome with varying number of markers, QTL location and effect sizes

Mmu2QTL

Nimbus

The Nimbus software suite for the analysis of amplicon based NGS data

QDNAseq

QDNAseq package for Bioconductor

rna-fusions

rnaseq_training

SCEVAN

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

STA250Duncan

Assignments for STA250 course by Duncan Temple Lang

tgv_2023

WannaAln

fork of wannaAln