Ritchie Lab

Ritchie Lab's repositories

eQTpLot

Visualization of Colocalization Between eQTL and GWAS Data

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Gene-level-statistical-colocalization

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GWAS-QC

Quality control steps for GWAS

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hudson

An R package for creating mirrored Manhattan plots

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athena

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biobin

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pMDR

Parallel MDR (Multifactor dimensionality reduction)

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COVID-19-patient-survey

Patient reported surveys to deploy in observational studies during COVID-19 pandemic

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dnanexus

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genomeSIMLA

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LPC

Documentation and informational resources for LPC use

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multi_tissue_twas_sim

This repository provides scripts to simulate SNP-expression-trait relationships across multiple tissues.

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LOKI

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PLATO

PLatform for the Analysis, Translation, and Organization of large-scale data

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visualization

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biofilter

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biofilter-manual

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biofilter-paper

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eMERGE-PGX

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GWAS-QC-Internal

Quality control steps for GWAS -- Internal Use

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imputation

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ldspline

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LocoColoc

Consolidation of ColocQuiaL, eQTLPlot and Sudha's Gene Based Coloc tools

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metabochip-phewas

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paris

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PrediXcan_TWAS_nextflow

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rjungle

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SKAT

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tutorials

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utility

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