RhettRautsaw

Rhett M. Rautsaw's repositories

VenomMaps

Distribution maps and niche models for venomous snakes.

Language:R11 10

Bioinformatics

This repository contains many simple, but potentially useful bioinformatics scripts as well as functions and resources for improving your skillset and performing really cool analyses.

Language:Python8 10

TransMap

TransMap is an analysis pipeline for cross-species comparative transcriptome expression analyses.

Language:RGPL-3.05 2 1

MitoSIS

MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.

Language:Python4 2 2

VariantCaller

VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.

Language:PythonGPL-3.04 1 1

CoordinateMapper

Shiny app to quickly plot latitude/longitude points via copy-paste from spreadsheet.

Language:R3 10

SequencingEstimator

This Shiny App is designed to help you estimate sequencing needs and costs on various platforms.

Language:R3 10

PhyProbe

PhyProbe is a bioinformatic pipeline designed to extract phylogenetic loci from Next-Generation Sequencing datasets including RNAseq, WGS, and Sequence/Target Capture methodologies (e.g., AHE, UCEs).

Language:PythonGPL-3.02 10