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Center for Reproducible Neuroimaging Computation (ReproNim)

Center for Reproducible Neuroimaging Computation

ReproNim

Geek Repo

Home Page:http://repronim.org

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Center for Reproducible Neuroimaging Computation's repositories

neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

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reproin

A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners

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containers

Containers "distribution" for reproducible neuroimaging

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reproman

ReproMan (AKA NICEMAN, AKA ReproNim TRD3)

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reproschema

A standardized form generation and data collection schema to harmonize results by design across projects.

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reprostim

Automated capture of audio-visual stimuli into BIDS datasets

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reproschema-library

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repronim.github.io

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reproschema-ui

UI to render ReproSchema based protocols and assessments.

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simple2_NIDM_examples

ReproNim simple2 NIDM files for ABIDE/ADHD200 available from datalad

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metasearch

OpenNeuroLab MetaSearch App

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reproschema-py

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segstats_jsonld

Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM

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reproschema-protocol-cookiecutter

A cookiecutter for reproschema protocols.

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antspy-docker

Working with a dockerfile setup for antspy

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containers-artwork

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demo-protocol

an example protocol which serves as default protocol in schema-ui

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ds000003-bids2nda-demo

Demo case on: bids2nda on part of dataset, datalad run/rerun, etc

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eab-demo

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nimh-minimal

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promo_materials

Repo for promotional materials

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reproflow

Materials for ReproFlow: ReproNim tools to establish scalable and automated MRI and behavioral data acquisition and QC

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ReproLake-misc

Centralization of the issues discovered with reprolake prototypes etc

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repromon

A service to monitor data acquisition etc to alert if anything goes wrong

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reproschema-demo

A demo for the reproschema paper

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reproschema-demo-protocol

A demo protocol for the ReproSchema paper

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ReproStories

A location to hold potential RerpNim How would you solve simple things ideas and drafts. Perhaps they will graduate into the official ReproNim How Would document...

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ReproTube

Collection (git-annex/DataLad dataset) of educational videos

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SOBPHack-052024

Website for SOBP BrainHack - 2024

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test-babs

a mix of instructions and scripts to try BABS using slurm in a container (podman)

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