Remy Liu's repositories
awesome_ytcnl
A curated list of Remy's favorite YouTube channels
bionic_with_eval
All in one repo for both the BIONIC model and the evaluations with minimal installation overhead.
bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
cellxgene-census
CZ CELLxGENE Discover Census
DSTG
Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
embiggen
🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.
ensmallen
🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.
gli
🗂 Graph Learning Indexer: a contributor-friendly and metadata-rich platform for graph learning benchmarks. Dataloading, Benchmarking, Tagging, and more!
GraphGPS
Recipe for a General, Powerful, Scalable Graph Transformer
HoloNet
HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shaping cellular phenotypes
hydra
Hydra is a framework for elegantly configuring complex applications
LaPreprint
📝 A nicely formatted LaTeX preprint template
PecanPy
A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec
proteinshake
Protein structure datasets for machine learning.
pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
pylogconfig
Easily configure Python logger with configuration files.
pytorch_geometric
Graph Neural Network Library for PyTorch
remylau.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
scTAG
"ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022
so-vits-svc
SoftVC VITS Singing Voice Conversion
sota_cell_type_annotation
A collection of state-of-the-art machine-learning methods for cell type annotation with utilities to run/reproduce them.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
submitit
Python 3.6+ toolbox for submitting jobs to Slurm
tuning_playbook
A playbook for systematically maximizing the performance of deep learning models.