Matthias Grenié's repositories
taxo_harmonization
:notebook: Companion code for Grenié et al. 2022 MEE "Harmonizing taxon names in biodiversity data: a review of tools, databases, and best practices" preprint: 10.32942/osf.io/e3qnz
courses_and_workshops
:clipboard: A list of GitHub repositories with courses and workshops I created or have contributed to
automated_trait_retrieval
Collection of software to automatically retrieve species functional trait data from databases. R packages, Python and Julia modules.
biodiversity_facets_tutorial
Repository for practical session on "Biodiversity facets in macro-space" https://s.42l.fr/biodiv https://s.42l.fr/nulldata
rekyt.github.io
Repo containing my published personal website
APD
The Australian Plant Traits Dictionary
Bayesian-Statistics
This repository holds slides and code for a full Bayesian statistics graduate course.
blogdown_source
Source for rekyt.github.io
crocodiles_funrar
Testing relationship between extinction risk and functional distinctiveness
fddimensionality_ms
:notebook: Compendium with companion code of Grenié et al. "When more is less: adding more traits dilutes the functional diversity-environment relationship"
funbiogeo_may_summary_2023
📃 Summary about 'funbiogeo' from May 2023
fundiversity_sdiv_presentation
📃 Presentation given in the context of the sDiv lab meeting on fundiversity
GIFT
Functions to extract data from Global Inventory of Floras and Traits (GIFT)
highcharter
R wrapper for highcharts
hillR
An R pakage to calculate diversity through Hill Numbers
l3_project
Repo to hold datasets for L3 project
mFD
:package: A Computation of Functional Spaces and Functional Diversity Indices
performance
:muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)
poster_alientraitgaps_sfe_metz_2022
Poster on Gaps in Alien Species Trait Data from SFE²-GfÖ-EEF Joint Conference in Metz 2022
rekyt.r-universe.dev
R-universe base repo
roweb3
rOpenSci website source
targets
User manual of the targets R pacakge
taxonomic_harmonization_lecture
:page_with_curl: Lecture on Taxonomic Harmonization given at the NFDI4Biodiv & GfÖ Winter School 2022
virtuoso
:package: Interact with Virtuoso Open Source database instances from R