Reda-Abdellah

batchgenerators

A framework for data augmentation for 2D and 3D image classification and segmentation

alumni

for alumni workshop

Anima-Scripts-Public

Open source processing scripts using Anima tools

LesionSeg

Multiple Sclerosis Lesion Segmentation with Tiramisu and 2.5D Stacked Slices

POPCORN

popcorn_docker

Connected_components_PyTorch

A PyTorch implementation of Connected Components Labeling

CRFasRNNLayer

Conditional Random Fields as Recurrent Neural Networks (Tensorflow)

deepIQA

NR and FR IQA models based on Deep Convolutional Neural Networks

deepmedic

Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans

EvaluateSegmentation

A program to evaluate the quality of image segmentations.

focal-tversky-unet

This repo contains the code for our paper "A novel focal Tversky loss function and improved Attention U-Net for lesion segmentation" accepted at IEEE ISBI 2019.

gans-awesome-applications

Curated list of awesome GAN applications and demo

H-DenseUNet

TMI 2018. H-DenseUNet: Hybrid Densely Connected UNet for Liver and Tumor Segmentation from CT Volumes

imbalanced-regression

[ICML 2021, Long Talk] Delving into Deep Imbalanced Regression

imgclsmob

Sandbox for training convolutional networks for computer vision

lpips-tensorflow

Tensorflow port for the Learned Perceptual Image Patch Similarity (LPIPS) metric.

manifold-diffusion

Diffusion on manifolds for image retrieval

MRI_2D_Visualization_Quality_Check

NiftyNet

An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

nn-transfer

Convert trained PyTorch models to Keras, and the other way around

open_ms_data

Open MS Data

PerceptualSimilarity

Learned Perceptual Image Patch Similarity (LPIPS) metric. In CVPR, 2018.

pySuStaIn

Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.

RedNet

This is an official release of the RedNet architecture.

robot-surgery-segmentation

Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge

SASSnet

Shape-aware Semi-supervised 3D Semantic Segmentation for Medical Images

segmentation_models

Segmentation models with pretrained backbones. Keras and TensorFlow Keras.

TP_SE

WiMSE

A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.