Raman Lab, IIT Madras's repositories
minMicrobiome
Code for generation of Minimal Microbiomes using a constraint-based approach
fbc_curation_matlab
fbc_curation contains MATLAB/COBRA helpers for reproducibility of fbc models.
SysBioBook-codes
This repository contains companion codes, developed for use with the CRC Press Book "An Introduction to Systems Biology" by Karthik Raman
minRerouting
Package to understand the compensatory mechanisms performing similar metabolic functions through analysis of Synthetic Lethals
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox
COWAVE
COVID-19 Wave dataset, based on WHO dataset and labelled as waves based on a new definition.
iCOMIC_doc
iCOMIC is an open source genomic data analysis tool characterized by a user friendly GUI. It integrates many independent core workflows for Whole Genome/Exome Sequencing and RNA-Seq data analysis.
Metabolic-Modelling-of-the-ISS-Microbiome
Created on 2020-11-04 to maintain versions of the project from this time point onwards.
NetGenes
dummy repo for redirects
NonLinearAdptation
This repository contains the necessary MATLAB and SIMULINK files for the simulation studies done in the manuscript titled, 'Design Principles for Global, Perfect Adaptation]{Design Principles for Perfect Adaptation in Biological Networks with Nonlinear Dynamics'
Panera
MATLAB repository to construct pan-genus metabolic models (PGMM)
structure-based-drug-design
Structure based Drug Design using Distance prediction with Graph Neural Networks - Dual Degree Project