Ragnar Groot Koerkamp's repositories
astar-pairwise-aligner
A pairwise sequence aligner written in Rust
oxford-bioinformatics-template
Improved version of the Oxford Bioinformatics paper template
author-plot
Plot correlation between authors of papers
minimizers
Measure experimental density of bd-anchors
just-shell
Tiny shell for invoking `just` rules.
1brc-1
1️⃣🐝🏎️ The One Billion Row Challenge -- A fun exploration of how quickly 1B rows from a text file can be aggregated with Java
bapctools-git
AUR package for BAPCtools
block-aligner
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
cargo-depgraph
Creates dependency graphs for cargo projects using `cargo metadata` and graphviz.
domjudge
DOMjudge programming contest jury system
feh
fast and light Imlib2-based image viewer
problem-package-format
Kattis problem package format specification
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
rust-bio-tools
A set of command line utilities based on Rust-Bio.
simple-saca
Fork to make some PRs
smhasher
smhasher fork to test NtHash
sucds
Collection of succinct data structures in Rust
sway-contrib
A collection of user-contributed scripts for sway
triple_accel
Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance calculations and string search.
WFA2-lib
WFA2-lib: Wavefront alignment algorithm library v2