RafaellaFerraz

prostateimmuneatlas

single-cell RNAseq analysis notebooks accompanying Tuong et al.

GeneNMF

Methods to discover gene programs on single-cell data

Immuno_notes

Immunology-related bioinformatics data and tools

scRNA-seq_notes

A list of scRNA-seq analysis tools

scRNAseq-analysis-notes

scRNAseq analysis notes from Ming Tang

scLNC

scLNC: A tool for lncRNA functional analysis in single-cell RNA-seq

LoveMangiola2022_tidytranscriptomics

Tidy transcriptomics part of the workshop for tidy genomics of Michael Love and Stefano Mangiola

DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

scanpy-tutorials

Scanpy Tutorials.

bioc2016singlecell

Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor

MyeloidDerivedCells_in_TME

awesome-deep-learning-single-cell-papers

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

workshop-scRNAseq

Single cell RNA sequencing analysis course

TMECircDB

BI-BE-CS-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

Lineage_Plasticity_in_CRPC

ppgeec_machinelearning_plus

This is a repository for a machine learning supplementary course to EEC1509, which is a graduate course offered by PPgEEC/UFRN.

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

RIMA

RIMA_pipeline

scRNA-seq_online

pagoda2

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

SingleCell_23

Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells

curso_rnaseq

Beeline

BEELINE: evaluation of algorithms for gene regulatory network inference

CSlncR

elife_2022

Lets_Code_DS_Degree_Alunos_ML

Repositório de aulas da turma de DS Degree no Módulo de Machine Learning