Development team for the RTX biomedical reasoning tool

RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

RTX

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)

NL2TRAPI

A prototype investigation of converting natural language questions to the TRAPI format

PloverDB

xDTD_training_pipeline

This repo is created for hosting a pipeline for automatically training xDTD model.

d2s-docs

📖 Home for the Data2Services project documentation

kgx

Knowledge Graph Exchange tools for BioLink model-compliant graphs

mediKanren

Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

owltools

OWLTools

result-merging

TRAPI Response merging

robot

ROBOT is an OBO Tool

ScoringAnalysis

Code to parse ARS results dump and extract ARA scores

translator-developer-documentation

Official Developer Documentation repository for the Biomedical Data Translator: https://translator-developer-documentation.readthedocs.io/en/latest/

translator-lfs-artifacts

NCATS Biomedical Data Translator repository for shared, large file access

translator-testing-framework

A testing framework for Translator using tests written in Behave

umls2rdf

These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.

DrugConflator

Tool to find the "essential drug" corresponding to any biolink:ChemicalEntity