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QuackenbushLab

QuackenbushLab

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QuackenbushLab's repositories

yarn

YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization

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phoenix

PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics

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FENRIR

RNA-seq pipeline to detect viral reads

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pypanda

Python implementation of PANDA and LIONESS

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grand

GRAND database of gene regulatory networks.

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matlab-panda

MATLAB implementation of PANDA & LIONESS algorithms

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pandaR

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/pandaR.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=pandaR.

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cobra-experiments

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MONSTER

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neural_ODE

project: replacing the use of RNNs in gene-regulatory network prediction, with ODEs.

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normFigures

Scripts to preprocess entire GTEx dataset and produce all rough figures

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devbrim

Modify bipartite modularity maximization algorithm

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gpuzoo

Benchmarks of the gpuZoo implementations.

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