leo's repositories
2021-04-26-umich-rnaseqDemystified
RNA-Seq Demystified workshop
analysis-workflows
Open workflow definitions for genomic analysis from MGI at WUSM.
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
CharGer
Characterization of Germline variants
core-algorithm
算法集锦的python实现
datahub-study-curation-tools
Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
gdc-workflow-overview
Overview of GDC Harmonization Workflows
genome-nexus-annotation-pipeline
Library and tool for annotating MAF files using Genome Nexus Webserver API
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
learn-python3
Jupyter notebooks for teaching/learning Python 3
oncokb-annotator
Annotates variants in MAF with OncoKB annotation.
pdpeng.github.io
✒️ 攻城狮杰森 - 董哲朋的博客，竭力成为一名 Full Stack Developer~
pori
Platform for Oncogenomic Reporting and Interpretation (PORI)
postcards
💌 Create simple, beautiful personal websites and landing pages using only R Markdown.
pyCDxAnalysis
pyCDxAnalysis is a python library to formating, filtering, analyzing and visulizing cancer companian diagnosis data.
pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
r-logging
R port of the popular log4j logging module
SingleCellMultiOmics
Tools which deal with multiple single cell measurements
transvar
TransVar - multiway annotator for precision medicine
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)
warp
WDL Analysis Research Pipelines
wdl
Workflow Description Language - Specification and Implementations