Public Health Scotland

phstemplates

Standard R templates and project structure for Public Health Scotland (https://public-health-scotland.github.io/phstemplates/)

Hospital-Acute-Activity

Code to create Public Health Scotland's Hospital Acute Care Activity publication

hsmr

Reproducible Analytical Pipeline of the Hospital Standardised Mortality Ratio (HSMR) quarterly publication

learn-git

phsopendata

Functions to extract and interact with data from the Scottish Health and Social Care Open Data platform.

scotpho-indicator-production

Code used to prepare data for indicators in ScotPHO's profiles

learnr-online

An interactive, online introduction to R training for employees in Public Health Scotland.

slfhelper

An R package for working with the SLFs

Mental-Health-Inpatient-Activity

technical-docs

Technical documentation, including guidance and best practice for Public Health Scotland (PHS)

dementia-pds

Reproducible Analytical Pipeline (RAP) for Dementia Post-Diagnostic Support (PDS) management reports and publication.

knowledge-base

Web app for PHS staff to access training and guidance resources and social content related to Data Science.

source-linkage-files

This repo is for the syntax used for the PHS Source Linkage File project

SPBAND

Code to produce the Scottish Pregnancy, Births and Neonatal Data dashboard (SPBAND)

health-and-care-experience-survey-2023

This repository contains the code for analysing the 2023 health and care experience survey

qpi-dashboard

Processing of Quality Performance Indicators data, as part of the National Cancer Quality Programme (Scotland).

AAA-quarterly-extract

cancer-patient-experience-survey-2024

This repository contains the code for analysing the 2023 health and care experience survey

CAPTND

A patient-level dataset for outpatient mental health in Scotland.

dose_instruction_parser

Parsing prescription dose instructions using Named Entity Recognition and rules

LIST-examples

A collection of best practice examples for use by LIST team members.

national-indicators

Code for production of the National Indicators

package-dev-guidance-site

Repo for a small website of resource on PHS/general best practice for package development

AHP-Long-Waits

intro-to-mapping-session

Materials for an introductory mapping in R session

metadata-catalogue-dashboard

R Shiny dashboard to display the metadata for the health & wellbeing catalogue.

MHQI-Dashboard

The Mental Health Team's repo for the Mental Health Quality Indicators Dashboard

phslookups

PHS Lookups

scotpho-profiles-app

Code behind re-development of online ScotPHO profiles shiny app

vacc-dq-reporting

Repository for data quality reporting by the PHS Data Management Vaccines team.