Prosad Das's repositories
auspice
Web app for visualizing pathogen evolution
Auto-qPCR
A program to automatically process qPCR data from csv files in any PCR machine. To create a normalized table of RNA/DNA quantities, statistics and bar charts.
awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
bash
useful bash one-liners and scripts
Bash-Cheat-Sheet
A cheat sheet for bash commands.
best-of-ml-python
🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
coreutils
upstream mirror
crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
Data-Science-For-Beginners
10 Weeks, 20 Lessons, Data Science for All!
dengue
Nextstrain build for dengue virus
Getting-started-in-Technical-Writing
A compilation of useful resources for anyone who wants to get started in technical writing.
git-for-science
A quick introduction to version control with Git and GitHub
guidescan-cli
A gRNA database generation tool.
jvarkit
Java utilities for Bioinformatics
labs
This is a collection of tutorials for learning how to use Docker with various tools. Contributions welcome.
MDPI_special_issues
Scraping MDPI website to get the number of special issues for each of 74 journals with an IF
mtheme
A modern LaTeX Beamer theme
ngs-tools
Reusable tools for working with next-generation sequencing (NGS) data
OSCA
The package wrapping the book, for deployment via the Bioconductor build system.
RecGen
Conditional Variational Autoencoder for the prediction of site-specific recombinases selective for a specified target site
skill-assessments
Training requirements for joining projects
speciesprimer
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
squigulator
a tool for simulating nanopore raw signal data
tidyqpcr
quantitative PCR analysis in the tidyverse
zika-tutorial
Data and scripts for Zika virus tutorial
zika-tutorial-nextflow
Nextflow based pipeline for Zika tutorial