DEBBIE- database of biomedical materials's repositories
DEBBIE_pipeline
A pipeline for the extraction of information about biomaterials from PubMed abstracts into a MongoDB collection
Ontology_DEB
The Device, Experimental scaffolds and medical Device ontology (DEB)
Biomaterials_annotator
A lexical instrument to annotate biomaterials text
gold_standard_set
PMIDs of the gold standard set for 'biocompatibility'
ProjectDebbie.github.io
Project DEBBIE pages
pubmed_retrieval
python code to rertieve abstracts from pubmed
background_set
PMIDs of non-relevant articles to use for filtration
Biomaterials_annotated_corpus
Gold standard of biomaterials and biocompatibility literature annotated by the Biomaterials Annotator
Classifier
SVM classifier pre-trained on biomaterials abstracts
DEBBIE_dictionaries_annotations
Component of the Biomaterials Annotator that maps terms from dictionaries
mesh_tag_extractor
Extracts mesh tags from medline files
polydioxanone_project
Applying text analysis and annotation pipeline to the polydioxanone literature
pubmed_standardization
A component to convert the format from pubmed into the input format of the classifier