Hood-Price Lab for Systems Biomedicine

Multiomics-BMI

This repository includes the code used in our multiomics BMI study.

AgingMicrobiome

Aging Microbiome paper Wilmanski et. al.

Aging_Workshop_24

Course materials for the Systems Biology Of Aging Virtual Workshop 24

fimoService

The meme suite's fimo (find motif) as a microservice, written in python, with R and python clients

igvR

Genome track visualization in your web browser, from R - a Bioconductor package

MotifDb

This is a space for developing the MotifDb Package. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/MotifDb.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=MotifDb.

Statins_microbiome_project

BioShiny

R/Shiny widgets for molecular biology

Pareto_Paper

translator-bigquery-api

This is the API for the translator biqquery project

trena

WGCNA-Metabolon-Code

endophenotypeExplorer

tools to explore associations between eQTLs, variants, gene expression and gene regulation

TrenaMultiScore

create and explore TFBS/targetGene data assembled from many sources

bigFimo

CHD1

explore the regulation of CHD1 in hematopoiesis

geneReg-2021

source data and database fill code related to gene regulation: TF ChIP, RNA-binding, miRNA

ghdb

access to a local PostgreSQL version of GeneHancer

kats

a variety of kernel association tests

kg-explorations

some projects using graphs assembled from various sources

kg-reactome

transform reactome into entities and relationships, ready for import into knowledge graphs

lcApps

webapps for the longevity consortium

loganCenterHistory

analysis and visualization for Jen Eklund

nooa

N-of-1 analyzer: an exploration

TrenaProjectAD

TrenaProjectADMouse

explorations related to the Jackson Lab AD mouse

TrenaProjectErythropoiesis

transcriptional control during erythropoiesis

TrenaProjectHG38

data and functions with which to build (roughly) tissue-specific trena models

TrenaProjectMouseBrain

Data and methods for building gene regulatory models of mouse brain

trrust

TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions