Hood-Price Lab for Systems Biomedicine 's repositories
Multiomics-BMI
This repository includes the code used in our multiomics BMI study.
AgingMicrobiome
Aging Microbiome paper Wilmanski et. al.
Aging_Workshop_24
Course materials for the Systems Biology Of Aging Virtual Workshop 24
fimoService
The meme suite's fimo (find motif) as a microservice, written in python, with R and python clients
translator-bigquery-api
This is the API for the translator biqquery project
endophenotypeExplorer
tools to explore associations between eQTLs, variants, gene expression and gene regulation
TrenaMultiScore
create and explore TFBS/targetGene data assembled from many sources
geneReg-2021
source data and database fill code related to gene regulation: TF ChIP, RNA-binding, miRNA
kg-explorations
some projects using graphs assembled from various sources
kg-geneOntology
GO for graph databases
kg-reactome
transform reactome into entities and relationships, ready for import into knowledge graphs
loganCenterHistory
analysis and visualization for Jen Eklund
TrenaProjectADMouse
explorations related to the Jackson Lab AD mouse
TrenaProjectErythropoiesis
transcriptional control during erythropoiesis
TrenaProjectHG38
data and functions with which to build (roughly) tissue-specific trena models
TrenaProjectMouseBrain
Data and methods for building gene regulatory models of mouse brain