PreibischLab

PreibischLab's repositories

dl-cell-counting

Repo contains the implementation of the count-ception CNN (Tensorflow + Keras)

Language:Jupyter Notebook11 11 1

bigstitcher-mm

BigStitcher MicroManager interface

Language:Java1 100

CalendarSync

A repository for syncing an Exchange calendar to a google calendar

Language:Java1 80

DrosophilaWing

Analysis of Adult Drosophila Wing Images

Language:Java1 50

embryo-lineages

Tracking of the C. elegans embryo development using MaMuT

Language:Java100

ImgLib2TestEnvironment

To play around with ImgLib2

Language:Java1 20

Blob_Tracker4D

4D Blob tracker @V Kapoor

Language:Java080

Blobdetection

Track blobs

Language:Java080

cell_classification

Python script for the classification of cells

Language:Jupyter Notebook080

dl-club

Contains tutorials and projects related to the deep learning club at MDC

Language:Jupyter Notebook0100

dl-keras-data-generation

Contains functions (in java) that are missing in python or too time-consuming

Language:Java0100

dl-u-net

implementation of the u-net (Keras + tensorflow)

Language:Jupyter Notebook0100

DNACombing

Code for analyzing the quality of probes for detection of genomic loci

Language:Java070

EmbryoMatching

Find corresponding embryos imaged with confocal/epifluoresence

Language:Java0100

Entra_Transformation

Entropy conserving transformation tool @V Kapoor

Language:Java080

Hough

Hough Transform for Microtubules and Spindles

Language:HTML060

imglib2-ij

Translation between ImgLib & ImageJ data structures (both 1.x and 2)

Language:JavaNOASSERTION080

MSERLine

Interfaced structure for detecting continuous and piecewise continuous lines using MSER and Hough Transform with LM and WCoG optimizers.

Language:Java080

primfilters

Image filters library in python

Language:Python080

SPIM_Registration

Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

Language:JavaGPL-2.0080

spimdata

representation of multi-angle, multi-channel (etc.) SPIM images and their registration

Language:JavaBSD-2-Clause070