PoonLab's repositories
sierra-local
Retrieve HIVdb algorithm as XML and apply locally to HIV sequences
MiCall-Lite
Pipeline for processing FASTQ data from an Illumina MiSeq for human RNA virus (HIV, hepatitis C virus) genotyping
clustuneR
Implementing clustering algorithms on genetic data and finding optimal parameters through the performance of predictive growth models.
indelrates
Data and scripts used for HIV-1 group M indel rate estimation project
Poplars
Open-source implementations of popular tools from Los Alamos National Laboratory HIV Database
Bioplus
In-house scripts that extend the functionality of Biopython
comet-prot
Book chapter for upcoming Springer book Computational Methods in Protein Evolution
dynsbmR
Fork of read-only mirror of the CRAN R package repository. dynsbm — Dynamic Stochastic Block Models. Homepage: http://lbbe.univ-lyon1.fr/dynsbm
sup
Sequencing Uncertainty Propagation
tn
Optimization of genetic clustering methods by predictive modeling
tragula
Mapping networks of shared research expertise by word embedding analysis
tuning-disorder-virus
Ensemble classifier of intrinsic protein disorder for viruses