PolusAI

nyxus

A fully scalable robust image feature extraction library.

workflow-inference-compiler

A domain specific language for creating scientific pipelines

bfio

Interface to the Bioformats Java library

image-tools

mm-workflows

Molecular modeling workflows and extensions for workflow inference compiler

napari-nyxus

filepattern

Utility to extract metadata from a file name.

microjson

data-tools

Application-specific data transformation tools

jupyterlab-extensions

napari-bfio

bfio plugin for napari

sos-java

viv

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

theia

A scalable deep learning based bleed through correction algorithm.

.github

PolusAI Profile

argolid

ATAC-Seq-and-Single-Cell-ATAC-Seq-Analysis

ATAC-seq and scATAC-seq module developed by the University of Nebraska Medical Center

bfiocpp

examples

image-workflows

jhsingle-native-proxy

Wrap an arbitrary webapp so it can be used in place of jupyter-singleuser in a JupyterHub setting

jupyter-server-proxy

Jupyter notebook server extension to proxy web services.

jupyterlab-git

A Git extension for JupyterLab

pubmed-types

rshiny-server-cmd

Command line wrapper to run a named R Shiny Server script/folder

rxiv-types

tabular-tools

tools-templates

widget-ts-cookiecutter

A highly opinionated cookiecutter template for ipywidget extensions.

WIPP-frontend

Web Image Processing Pipeline (WIPP) - frontend