PolarBean

DeepSlice

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

allen2quicknii

Download Allen mouse datasets and format them for use in QuickNII

allen_download_utilities

utilities i use when downloading images from the allen institute for brain science

brainglobe-atlasapi

A lightweight python module to interact with atlases for systems neuroscience

brainglobe.github.io

brainglobe.info website

pythonClubGit

a repository for learning git in the nesys python club

DeepSliceWeightsMQ

A repository for weights files related to DeepSlice

dzi-tar-svc

ebrains_wizard

globalnews

ijp-imagetoatlas

2D sections to 3D atlas registration with Fiji and QuPath

iSponsorBlockTV

SponsorBlock client for all YouTube TV clients.

keras-coordconv

Keras implementation of CoordConv for all Convolution layers

KG-project-views-and-downloads

neuroglancer

WebGL-based viewer for volumetric data

onlyoffice.github.io

open-neuroscience.github.io

new implementation of Open Neuroscience website

openshift-test

PhotometryNotebooks

a series of notebooks for the analysis of Fiber Photometry

pianoputer

Use your computer keyboard as a "piano".

PyNutil

Python library for brain-wide quantification and spatial analysis.

python-lessons

QuickNII

https://quicknii.readthedocs.io

SCAR

Join our band of hyenas

scipy_KND_interpolator

SciPy library main repository

tar-dzi-svc

tiff-dzi-tar-svc

UGATIT

Official Tensorflow implementation of U-GAT-IT: Unsupervised Generative Attentional Networks with Adaptive Layer-Instance Normalization for Image-to-Image Translation (ICLR 2020)

WebAlign

https://webalign.readthedocs.io

WebWarp

https://webwarp.readthedocs.io