PolarBean

DeepSlice

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

DLC_ROI_tool

A tool for drawing ROIs on videos and analysing deeplabcut videos.

CellfHelp

Do you have a dataset of xyz neuron coordinates within allen brain space? With this tool you can find exactly which brain region each xyz point lies in.

allen2quicknii

Download Allen mouse datasets and format them for use in QuickNII

brainglobe-atlasapi

A lightweight python module to interact with atlases for systems neuroscience

brainglobe.github.io

brainglobe.info website

pythonClubGit

a repository for learning git in the nesys python club

DeepSliceWeightsMQ

A repository for weights files related to DeepSlice

dzi-tar-svc

ebrains_wizard

globalnews

ijp-imagetoatlas

2D sections to 3D atlas registration with Fiji and QuPath

iSponsorBlockTV

SponsorBlock client for all YouTube TV clients.

keras-coordconv

Keras implementation of CoordConv for all Convolution layers

KG-project-views-and-downloads

neuroglancer

WebGL-based viewer for volumetric data

onlyoffice.github.io

openshift-test

PhotometryNotebooks

a series of notebooks for the analysis of Fiber Photometry

pianoputer

Use your computer keyboard as a "piano".

python-lessons

QuickNII

https://quicknii.readthedocs.io

SCAR

Join our band of hyenas

scipy_KND_interpolator

SciPy library main repository

tar-dzi-svc

tiff-dzi-tar-svc

UGATIT

Official Tensorflow implementation of U-GAT-IT: Unsupervised Generative Attentional Networks with Adaptive Layer-Instance Normalization for Image-to-Image Translation (ICLR 2020)

WebAlign

https://webalign.readthedocs.io

WebWarp

https://webwarp.readthedocs.io

what_do_mol_prop_look_like

What do molecular properties look like?