Anand Mayakonda's repositories
TCGAmutations
R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
basegraphics
Pretty plots using pure base graphics in R
somaticfreq
knowledge-based genotyping of cancer hotspots from the tumor BAM files
beadAnalyze
Automated differential expression analysis for Illumina beadarrays (HT12 V4 arrays).
varscan_accessories
accessory scripts for processing varscan somatic/copynumber outputs.
annovar2maf
Tiny python script to generate MAF files from output generated by standard annotation programs
basecounts
A tool to extract ATGC/Indel read counts at user specific loci from BAM files
COVID_rXiv
code for Visualizing COVID19 metadata from public sources
ProjectTemplate
A template utility for R projects that provides a skeletal project.
flatuicoloRs
Color palettes from https://flatuicolors.com/ in R
PoisonAlien.github.io
https://poisonalien.github.io/
Variant_catalogue_pipeline
CAFE pipeline