Plrbear / biomedical-image-segmentation

Multi-Level Contextual Network for Biomedical Image Segmentation

Multi-Level Contextual Network for Biomedical Image Segmentation

Overview

Paper: https://arxiv.org/abs/1810.00327

Datasets

Download links

• The tree of dataset dir must be like:

-dataset
 |
 -----masks
 |    |
      -----x.png
 |    |
      -----y.png
 |    |
      -----...
 |
 ---- train
 |    |
 |    ---- x.png
 |    |
 |    ---- …
 |
 ---- test
      |
      ---- y.png
      |
      ---- …

Data agumentation

Training

run: bash train.sh

#ad1: address of a fold ( among 5 folds for cross validation)
#ad2: train images
#ad3: test images
#ad5: masks

Dependencies

• Tensorflow
• Keras >= 2.0
• Python >= 2.7